Recombinant DNA Technology OR rDNA Technology – An Overview

Recombinant DNA Technology OR rDNA Technology – An Overview

First things first, what is recombinant DNA technology? rDNA technology is widely used technique in the field of genetic engineering. What basically happens in rDNA technique is, we take our gene of interest and insert into a vector. A vector is a vehicle which transports our gene of interest to the host cell. E.g. Plasmid – it is extrachromosomal DNA which has the ability replicate independently.

Therefore, rDNA is combination of two different types of DNA. Let’s say I take a gene of interest e.g. human insulin gene and insert it in a vector e.g. plasmid from E.coli. So what we get is a recombined DNA and this construct is called recombinant DNA (Figure 1).

Figure 1. rDNA

Steps Involved in rDNA Technology :

  • Isolation of Gene of Interest –

    First thing would be to isolate our gene of interest. Say for example, we were talking about human insulin gene or it can be any other gene you are interested in. So from where can we isolate the gene of interest? It can be obtain from,
    Genomic library – which contains many different genes.
    cDNA library – which is a complementary DNA library or
    Chemically synthesize it – if we know the sequence of our gene of interest.
    Now that we have got our gene of interest, all we need is a vector to make rDNA. So the next step would be to insert our gene of interest into a vector.

  • Construction of rDNA by joining the Gene of Interest into a Suitable Vector –

    In order to insert the gene of interest into a vector we need to cut open the vector first and after insertion, seal it back. So cutting of a vector would be done by molecular scissors called restriction enzymes. And sealing or ligation of gene of interest with the vector would be done by ligase enzyme.So at the end of this step we would get rDNA (Figure 1).
    Our rDNA is ready now but we need this rDNA in multiple copies to get good amount of product. Also we need a living system where the gene of interest can be expressed to give us our product. So the next step is,

  • Introduction of rDNA into a Suitable Organism –

    How can we transfer rDNA in a host (suitable organism)? For this purpose we have specific gene transfer methods such as,

    Physical gene transfer – electroporation, liposome mediated gene transfer, microinjection
    Chemical gene transfer – PEG method, calcium chloride method
    Virus mediated gene transfer – virus is used to transfer the rDNA

Figure 2. Introduction of rDNA into a Host Cell

Once we perform the gene transfer method (Figure 2), there can be three possible outcomes (Figure 3).

Figure 3. Three Possible Outcomes following the Gene Transfer Methods

Non-transformed cells – not all the host cells would take up the rDNA. Chances are there that some cells would be non-transformed cells.
Transformed cells with non-recombinant vector – here we have got transformed cells but the vector is non-recombinant and this can happen when in step 2, while preparing rDNA some of the vectors do not take up the gene of interest.
Transformed cells with recombinant vector – cells that have got rDNA and this is the type we are looking for.

So the next step would be to isolate transformed cells with rDNA right!

  • Isolation of Transformed Cells with rDNA –

    We need some kind of screening method to differentiate between the transformed cells with rDNA from other cells. For this we can use antibiotics in the media and while constructing the rDNA it is made sure that it contains some antibiotic resistant gene. So when we grow all three types of cells only the cells with rDNA can survive and form colonies. We can also use visible pigmentation assay such as blue-white screening where non-transformed or without gene of interest cell would produce blue colonies whereas transformed cells with rDNA would produce white colonies (Figure 4).

Figure 4. Blue-White Screening Showing Transformed Cells with rDNA

  • Multiplication and Expression of Gene of Interest –

    Once we isolate the cells with rDNA we need to multiply them to get multiple copies of gene of interest and express it to get desired protein product.

Figure 5. Multiplication of rDNA within a Host Cell

The plasmid in rDNA has the ability to replicate itself. So it will multiply in the host producing multiple copies (Figure 5) and the cell will express the gene of interest to give desired protein.

Examples of rDNA Products –

Production of recombinant human insulin, recombinant human growth hormones, recombinant blood clotting factor VIII, recombinant hepatitis B vaccine etc.

I hope this post was helpful 🙂

Understand this topic in more details in this video.

Agrobacterium – Nature’s own genetic engineer!!

Agrobacterium – Nature’s own genetic engineer!!

Agrobacterium is nature’s beautiful creation and it is nature’s own genetic engineer. This microscopic genius has the ability to transfer its gene to plant and this property has made Agrobacterium very popular in the field of genetic engineering. Because utilizing this property scientists are able to obtain improved quality plants.

Agrobacterium is Gram negative soil bacteria and when it infects plant i.e. when it transfers its gene to plant, the plant develops Crown Gall disease. So in this post we will see the important genes involved in the transfer and of course at the end I will share my trick to remember which gene does what function. So let’s get started 🙂

Agrobacterium’s gene transfer property is within its plasmid called Ti plasmid. Ti stands for Tumor Inducing.

Figure a shows the important segments of Ti plasmid which are as followed.

  1. Ti plasmid has T-DNA region which is transfer region and it is the only part which gets transfer from bacteria to plant. This T-region contains auxin production, cytokinin production and opine synthesis genes.
  2. Ti plasmid also has virulence region which is require to mediate the gene transfer. This region includes genes such as vir A, vir B, vir G, vir C, vir D and vir E.

Mechanism of Gene Transfer :

  •   When a plant gets injured (may be by insect bite), it causes secretion of phenolics such as acetosyringone from plant. This acetosyringone acts as attractant for Agrobacterium. As a result, lot of Agrobacterium would get attracted towards the wounded region of the plant.
  •   Acetosyringone activates the vir A which is a transmembrane protein by autophosphorylating it. Once vir A is activated it activates vir G by phosphorylating vir G. Now protein G is transcription factor which means once it is activated it transcribes remaining genes of vir region i.e. vir B, vir C, vir D and vir E.
  •   The first vir gene to be transcribed is vir C, which makes a complex with right T-DNA border.
  •   Second gene in the line is vir D which act as endonuclease. It recognizes the right T-DNA border + protein C complex and it will digest or form a nick in that region.
  •   Third event is formation multiple copies of vir E gene. Now this multiple copies of protein E would bind to the nicked portion of T-DNA and escorts it from bacteria to plant.
  •   But wait, how would it take T-DNA from bacteria to plant? Is there any channel or bridge between both? This problem is solved by vir B gene which provides bridge between the bacteria and plant and T-DNA is transferred through this.
  •   Following the transfer of T-DNA to plant, it gets inserted into the chromosome of plant. Now remember we just saw that T-DNA has auxin production, cytokinin production and opine synthesis genes? So these genes will now start getting expressed. When auxin and cytokinin genes are expressed, it causes uncontrolled growth of plant cell resulting into tumor or Crown Gall disease.
  •   What about opine synthesis gene? When it is expressed, it secretes opine into the soil which attracts the soil Agrobacterium and they will utilize this opine as their nutrient source.

 

Wonderful mechanism, isn’t it? Now my favorite part!! How to remember functions of these genes? What I do is, I correlated their function with what a gene is called. Like,

A = Autophophorylation

G = Gene transcription

C = Complex formation with T-DNA

D = Digestion

E = Escorting T-DNA

B = Bridge formation

 
For more explanation watch this video.